rs9826842 chr3:186162411 T>C
- Sequence
aaaaactccactctgaaaggggaa[T/C]tggcctggtctctatgttgagtga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HL-60 (acute myeloid leukemia) macrophages CD14+ monocytes
- ASB for transcription factors
- ATF7_HUMAN SPI1_HUMAN IKZF2_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -4.42 | 4.47 | 1.00 | n/a | No Hit | |||
| SPI1_HUMAN | 0.76 | 2.98 | 1.92 | 5.37 | Concordant | |||
| IKZF2_HUMAN | -2.92 | 2.98 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | -3.69 | 2.55 | 2.00 | 3.02 | Concordant | |||
| CEBPB_HUMAN | -0.25 | 2.07 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, chronic kidney disease, hdl cholesterol, variant creutzfeldt-jakob disease