rs9828395 chr3:194682976 C>G
- Sequence
cttcaggtggggtggtcagcttct[C/G]cataaggtgaggcgggccctagag
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN CDN1B_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.09 | 0.50 | 1.36 | n/a | No Hit | |||
| CDN1B_HUMAN | 1.61 | -0.38 | 5.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.06 | -0.39 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Thyroid, Whole_Blood