rs9829683 chr3:37176131 C>A
- Sequence
gaagagctgctcgcccgcccggcg[C/A]ccgctggggctatgggcgaggggc
- ASB in cell types
- primary B-CLL cells GM12892 (female B-cells lymphoblastoid cell line) spleen LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN MAON_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.39 | 1.44 | 1.05 | -2.67 | Discordant | |||
| ZFX_HUMAN | -0.41 | 1.65 | 2.00 | n/a | No Hit | |||
| MAON_HUMAN | 1.98 | 0.41 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood