rs9834996 chr3:48717444 G>T
- Sequence
ggtgggccggaggtctgacgggcg[G/T]ttgggtggatagactagctgcggg
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.77 | n/a | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.31 | -3.73 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.21 | -1.25 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, chronic kidney disease, college completion, hdl cholesterol change with statins, ldl cholesterol change with statins, serum creatinine, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood