rs9835785 chr3:149080928 C>T

Sequence
atttcagcaatgacagaccacatg[C/T]attatgcaacagttgttccacaag
ASB in cell types
THP-1 (acute monocytic leukemia) SUM159PT (Triple negative breast cancer)
ASB for transcription factors
CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPA_HUMAN -0.93 1.58 1.003.0·10-3 1.07 1.96 Weak Concordant
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Motif analysis

CEBPA_HUMAN Weak Concordant
CEBPA_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  aortic valve calcium,  refractive error
GTEx eQTL Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Liver,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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