rs9836316 chr3:169966645 G>A
- Sequence
tccagttcccgcacagcaggagcg[G/A]agggaagaggggagagaaggcacc
- ASB in cell types
- HEK293 (embryonic kidney) GBM39 (Human brain tumor) foreskin keratinocyte BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- SMC3_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -1.98 | 2.16 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | 2.48 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, autism, ldl cholesterol change with statins, total cholesterol, triglycerides
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Cells_EBV-transformed_lymphocytes, Minor_Salivary_Gland, Pituitary, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid