rs9837291 chr3:196503693 G>C
- Sequence
tcgggcgcctggcgcagtttccca[G/C]agctccgcgcccccgtccctccta
- ASB in cell types
- CD34+ hematopoietic stem cells MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) fetal bone marrow-derived mononuclear cells T47D (invasive ductal carcinoma)
- ASB for transcription factors
- RBM25_HUMAN TIF1B_HUMAN CBP_HUMAN SUH_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 1.94 | -0.34 | 1.50 | n/a | n/a | |||
| TIF1B_HUMAN | 2.78 | 0.17 | 2.50 | n/a | n/a | |||
| CBP_HUMAN | 2.51 | 0.10 | 2.00 | n/a | n/a | |||
| SUH_HUMAN | -1.79 | 2.29 | 1.67 | 1.47 | Weak Concordant | |||
| INT13_HUMAN | -0.21 | 1.42 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Whole_Blood