rs9839347 chr3:196528999 G>C

Sequence
tcccggccacgcccgtcgctgagc[G/C]tgaggcgatggcggccgagctcag
ASB in cell types
HT1080 (fibrosarcoma) Kelly (neuroblastoma) SK-N-SH (neuroblastoma) MDA-MB-157 (triple negative breast carcinoma)
ASB for transcription factors
CTCF_HUMAN UBP7_HUMAN CTCFL_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.61 0.41 1.5·10-171.00 2.00 n/a No Hit
UBP7_HUMAN 2.23 n/a 6.0·10-31.00 1.00 n/a n/a
CTCFL_HUMAN 1.71 0.49 0.020.96 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Esophagus_Mucosa,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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