rs9839388 chr3:196529083 G>C
- Sequence
gatctaagggacatttataactcc[G/C]cagggactccggggtgggagtcag
- ASB in cell types
- foreskin keratinocyte PC9 (lung adenocarcinoma) Jurkat (T-cells) MDA-MB-157 (triple negative breast carcinoma)
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | -0.70 | 1.19 | 1.83 | |||
| PC9 (lung adenocarcinoma) | -0.40 | 1.50 | 1.50 | |||
| Jurkat (T-cells) | 2.47 | n/a | 1.00 | |||
| MDA-MB-157 (triple negative breast carcinoma) | 1.54 | -0.48 | 2.00 | |||
| esophagus squamous epithelium | 1.44 | 0.07 | 1.00 |
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