rs9839480 chr3:193872499 C>A
- Sequence
ggtgactcagcccacaagggaatg[C/A]gccaaacccagtgaattgattcac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) LY-2 (invasive ductal carcinoma)
- ASB for transcription factors
- ESR1_HUMAN CREB1_HUMAN BMI1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.13 | 0.38 | 1.88 | n/a | No Hit | |||
| CREB1_HUMAN | 1.53 | -0.34 | 1.33 | n/a | No Hit | |||
| BMI1_HUMAN | 2.76 | -2.64 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.43 | 0.35 | 1.00 | n/a | n/a | |||
| SSXT_HUMAN | -0.65 | 1.68 | 1.00 | n/a | n/a |
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