rs9840322 chr3:61560751 T>G
- Sequence
cggcgctgctttcaccctgcaggg[T/G]gtaagaggcgcacttcctgcgccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN CDK9_HUMAN ELF1_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.40 | 1.07 | 1.17 | 3.56 | Concordant | |||
| CDK9_HUMAN | -1.28 | 1.84 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 1.73 | -1.49 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.14 | 0.02 | 1.00 | n/a | n/a |
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Motif analysis
