rs9840592 chr3:168847537 T>C
- Sequence
aaaaaaatcaaagatatggcctct[T/C]acgaaaaagaaaatgatgattcaa
- ASB in cell types
- glioblastoma cells Kelly (neuroblastoma)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| glioblastoma cells | 0.86 | n/a | 5.00 | |||
| Kelly (neuroblastoma) | 0.28 | 1.80 | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Esophagus_Muscularis, Lung, Pituitary, Testis, Thyroid