rs9840826 chr3:125916672 C>G
- Sequence
acctaactcttgctgcagagtttg[C/G]agcgccgctttctggcggcgcgcg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN KDM5B_HUMAN CREB1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.80 | 0.09 | 1.93 | -0.28 | Weak Concordant | |||
| KDM5B_HUMAN | 3.02 | -2.60 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | 2.25 | -0.52 | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 1.72 | 0.64 | 1.90 | n/a | n/a | |||
| BRD2_HUMAN | 3.27 | -3.41 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Vagina, Whole_Blood