rs9842559 chr3:113533858 A>C

Sequence
gagaactgcagccatcagctgatc[A/C]atccaggttttgattttaaataag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
BACH1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BACH1_HUMAN 2.36 -2.38 0.041.00 1.00 3.78 Discordant
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Motif analysis

BACH1_HUMAN Discordant
BACH1_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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