rs9845943 chr3:160918061 T>G

Sequence
cacttgcacgcgaatccttctcac[T/G]cacaggagtcacccaccgatggaa
ASB in cell types
T47D (invasive ductal carcinoma)
ASB for transcription factors
HIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HIF1A_HUMAN 2.23 n/a 0.021.00 3.00 2.52 Discordant
Items per page:
1 – 1 of 1

Motif analysis

HIF1A_HUMAN Discordant
HIF1A_HUMAN pic

Genetic associations

GRASP body mass index (bmi),  parkinsons disease,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download