rs9850507 chr3:193190663 T>C
- Sequence
gagacctcccactaggaggcagta[T/C]aagtgtatgtctatatgagcccct
- ASB in cell types
- neural cell GBM39 (Human brain tumor) SK-N-SH (neuroblastoma) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.98 | 0.41 | 1.19 | -0.51 | Weak Concordant | |||
| SMC3_HUMAN | 1.45 | -0.53 | 1.25 | n/a | n/a |
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Motif analysis
