rs9850843 chr3:193530970 C>G
- Sequence
tttgccaaggtacattcagttccc[C/G]gaatggaatgtgctttgtcccttt
- ASB in cell types
- A1-2 (breast cancer cells) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- GCR_HUMAN PRGR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.33 | 1.54 | 2.80 | 3.64 | Concordant | |||
| PRGR_HUMAN | n/a | 1.73 | 4.43 | 5.21 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Nerve_Tibial, Ovary, Prostate, Testis, Thyroid, Whole_Blood