rs9851136 chr3:115092677 A>C
- Sequence
tccatctagtggccagtggagagg[A/C]gtggagccatagtaaccatgctgc
- ASB in cell types
- neural cell 22RV1 (prostate carcinoma) GM18486 (Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.28 | 0.59 | 1.16 | -1.66 | Weak Concordant | |||
| SMC3_HUMAN | 1.64 | -1.73 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.53 | -0.55 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.15 | 0.37 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.79 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
