rs9853967 chr3:167735251 T>C
- Sequence
gaggaaggaagggggtgaggggcc[T/C]gtggtggggatcctggggctgtcg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN SPI1_HUMAN FLI1_HUMAN ETS1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.12 | 3.73 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.59 | 0.33 | 1.21 | n/a | No Hit | |||
| FLI1_HUMAN | 1.72 | 0.65 | 1.50 | n/a | No Hit | |||
| ETS1_HUMAN | 1.52 | -1.09 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis