rs9854196 chr3:196528991 C>G
- Sequence
caggcggctcccggccacgcccgt[C/G]gctgagcgtgaggcgatggcggcc
- ASB in cell types
- HT1080 (fibrosarcoma) SK-N-SH (neuroblastoma) MDA-MB-157 (triple negative breast carcinoma) bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN UBP7_HUMAN STAT1_HUMAN CTCFL_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.73 | 0.42 | 1.98 | n/a | No Hit | |||
| UBP7_HUMAN | 2.45 | n/a | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.31 | -0.47 | 1.50 | n/a | No Hit | |||
| CTCFL_HUMAN | 1.80 | 0.53 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood