rs990107 chr7:107836468 T>G
- Sequence
cccaatgtgcgggagatattgagt[T/G]agtcataaacgcagcaatgtgtta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) CD34+ hematopoietic stem cells-derived proerythroblasts HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- GATA1_HUMAN GATA3_HUMAN MTG8R_HUMAN ATF3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 0.10 | 3.26 | 1.50 | n/a | No Hit | |||
| GATA3_HUMAN | -1.41 | 3.18 | 1.67 | n/a | No Hit | |||
| MTG8R_HUMAN | -0.48 | 0.48 | 1.00 | n/a | n/a | |||
| ATF3_HUMAN | -1.12 | 1.10 | 1.67 | 2.84 | Concordant | |||
| ARI1B_HUMAN | -0.42 | 0.42 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Liver, Thyroid