rs990626 chr2:169140541 G>A

Sequence
ggggggcaggttgataggcagttc[G/A]atggctgcaggaagggaaagccat
ASB in cell types
SU-DHL-2 (anaplastic large cell lymphoma) MEL1 (Mucosal melanoma)
ASB for transcription factors
AHR_HUMAN ITF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
AHR_HUMAN -1.64 2.19 1.000.04 1.00 n/a No Hit
ITF2_HUMAN 1.98 3.14 1.000.04 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  hdl cholesterol change with statins,  irritible bowel syndrome,  lp-pla2 mass

Download