rs9970334 chr1:6236178 T>G
- Sequence
ctgtgccgggcgggggccgggaag[T/G]ggtgggagaagtcgccgcccgcgt
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia)
- ASB for transcription factors
- SPI1_HUMAN RFOX2_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.97 | n/a | 1.00 | -2.08 | Concordant | |||
| RFOX2_HUMAN | 1.76 | -1.74 | 1.17 | n/a | n/a | |||
| ETS1_HUMAN | 1.70 | -0.33 | 1.00 | -1.83 | Weak Concordant |
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Motif analysis
