rs997349 chr7:30142828 G>A
- Sequence
gactaccgccttattagagagtca[G/A]tactttccgtacccagattcatgt
- ASB in cell types
- BEAS-2B (bronchial epithelium) LHSAR (prostate epithelial cells) foreskin keratinocyte
- ASB for transcription factors
- GCR_HUMAN ANDR_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.88 | 0.07 | 1.06 | -3.25 | Concordant | |||
| ANDR_HUMAN | 1.29 | -0.14 | 2.31 | -4.16 | Concordant | |||
| CTCF_HUMAN | 1.95 | -0.53 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial