rs998564 chr14:89672967 C>T

Sequence
tcaccccctggccacatcagatcc[C/T]ctcttacgccctgggcatgttttt
ASB in cell types
LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.21 1.36 1.006.5·10-18 1.48 n/a No Hit
ESR1_HUMAN -0.15 0.78 1.000.03 1.48 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  coronary artery disease (cad),  eye color,  lp-pla2 mass,  maternal transmission distortion,  transmission distortion
GTEx eQTL Adipose_Visceral_Omentum,  Testis

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