rs12608504 chr19:18278325 A>G
- Sequence
cccctgctctcccacctcagcctc[A/G]gttcccttcagcaggttccttcag
- ASB in cell types
- HEK293 (embryonic kidney) keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.00 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI waist circumference adjusted for bmi (adjusted for smoking behaviour), waist circumference adjusted for bmi (joint analysis main effects and smoking interaction), waist circumference adjusted for bmi in non-smokers, waist circumference adjusted for body mass index, waist-to-hip ratio adjusted for bmi, waist-to-hip ratio adjusted for bmi (adjusted for smoking behaviour), waist-to-hip ratio adjusted for bmi (joint analysis main effects and smoking interaction), waist-to-hip ratio adjusted for bmi in non-smokers, waist-to-hip ratio adjusted for bmi x sex x age interaction (4df test), waist-to-hip ratio adjusted for body mass index
GRASP arthritis including non-rheumatoid, fasting insulin, hdl cholesterol, hip bone mineral density (bmd), homa-b, homa-ir, hypertension (early onset hypertension), irritible bowel syndrome, ldl cholesterol, ldl cholesterol change with statins, longstanding arthritis, total cholesterol, total cholesterol change with statins, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Vagina, Whole_Blood