rs2241769 chr15:50424436 G>C
- Sequence
gctggcttccgtcctggtagccaa[G/C]gctaattctccctcgagttcttgg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) CD14+ monocytes GM12878 (female B-cells)
- ASB for transcription factors
- JUN_HUMAN STAT1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.25 | -0.77 | 1.22 | n/a | No Hit | |||
| STAT1_HUMAN | 2.59 | n/a | 2.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.24 | 0.11 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), aortic valve calcium, ldl cholesterol change with statins, rheumatoid arthritis, total cholesterol change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid