rs3128917 chr6:33092219 T>G
- Sequence
gagggtcagatagtggaacctgtg[T/G]aatctgagtttcttgctgggcagg
- ASB in cell types
- foreskin keratinocyte HCT-116-RAD21-mAC GM12878 (female B-cells) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.09 | 0.33 | 1.45 | n/a | No Hit | |||
| STAT1_HUMAN | 1.28 | -0.78 | 2.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP asthma, bipolar disorder, body mass index (bmi), chronic hepatitis b, comorbid depressive syndrome and alcohol dependence, follicular lymphoma (cancer), height, ige in plasma, obesity (body mass index (bmi)), primary biliary cirrhosis, primary biliary cirrhosis (antimitochondrial-antibody positive only), rheumatoid arthritis, rheumatoid arthritis (acpa-positive), serum creatinine, spine bone mineral density (bmd), years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood