rs3750774 chr10:70145813 C>A
- Sequence
cacgccgccgccctcggtgccggg[C/A]aggcagcgtgcgtcggtaagcagc
- ASB in cell types
- HepG2 (hepatoblastoma) erythroid progenitors erythroid cells foreskin keratinocyte
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HepG2 (hepatoblastoma) | 0.28 | 0.59 | 1.29 | |||
| erythroid progenitors | 2.48 | n/a | 2.00 | |||
| erythroid cells | -2.17 | 2.25 | 2.00 | |||
| foreskin keratinocyte | 0.55 | n/a | 2.67 | |||
| gastroesophageal sphincter | -1.54 | 1.70 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, hdl cholesterol change with statins, ldl cholesterol change with statins, rheumatoid arthritis, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood