rs678250 chr8:8753273 A>C
- Sequence
accaccacagctgctggtggagcc[A/C]agatgggtgtgtccatgcatagcc
- ASB in cell types
- GM12878 (female B-cells) germinal center B-cells K562 (myelogenous leukemia) Mutu-1 (Epstein-Barr virus-related Burkitt lymphoma)
- ASB for transcription factors
- FOXK2_HUMAN NCOR2_HUMAN BCL6_HUMAN COE1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -0.26 | 3.02 | 1.56 | n/a | n/a | |||
| NCOR2_HUMAN | n/a | 2.33 | 2.50 | n/a | n/a | |||
| BCL6_HUMAN | -0.36 | 1.97 | 1.92 | n/a | No Hit | |||
| COE1_HUMAN | -1.53 | 1.87 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, homa-b, homa-ir, hypertension (early onset hypertension), refractive error, serum creatinine, triglycerides, variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood