rs741446 chr19:32345900 C>T
- Sequence
ctcctcagccggccgacccccgcc[C/T]ggtgctagccacaagccccaagtt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells
- ASB for transcription factors
- JUN_HUMAN AP2A_HUMAN HDAC1_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.15 | 0.96 | 1.75 | n/a | No Hit | |||
| AP2A_HUMAN | 1.84 | -1.55 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.48 | 1.75 | 2.00 | n/a | n/a | |||
| ZFX_HUMAN | -0.04 | 1.17 | 1.93 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina