rs7525530 chr1:207309821 A>G
- Sequence
gactgatagccaaggaagcattta[A/G]ttggaccagctggctggggagggc
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) A549 (lung carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- NRF1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.05 | n/a | 3.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.29 | -0.25 | 2.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), fasting insulin, homa-ir, neuroblastoma (brain cancer), parkinsons disease, serum creatinine, suicide attempts in major depressive disorder
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Uterus, Vagina, Whole_Blood