rs806795 chr6:26205065 G>A
- Sequence
tcatgacttgttagacgattggtt[G/A]gtctctttataagttaattgttcc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- BMI1_HUMAN NCOR1_HUMAN FOXK2_HUMAN AFF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BMI1_HUMAN | 2.60 | n/a | 1.33 | n/a | n/a | |||
| NCOR1_HUMAN | -0.77 | 1.72 | 3.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.28 | 0.60 | 2.17 | n/a | n/a | |||
| AFF1_HUMAN | n/a | 2.66 | 3.00 | n/a | n/a | |||
| MNT_HUMAN | -1.04 | 1.22 | 2.58 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, hdl cholesterol, height, infant head circumference, prop taste detection threshold, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood