rs830576 chr9:33290534 A>G
- Sequence
gcacgtgacctggtgacagtgctg[A/G]cttggctgtacagctcgatctagg
- ASB in cell types
- macrophages CD14+ monocytes HEK293T (embryonic kidney) breast tumor tissue
- ASB for transcription factors
- CEBPB_HUMAN STAT1_HUMAN ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | -0.52 | 3.01 | 1.78 | n/a | No Hit | |||
| STAT1_HUMAN | -3.60 | 2.78 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | -3.23 | 2.32 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.60 | 0.49 | 1.18 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, cystatin c in serum, diastolic blood pressure (dbp), fasting blood glucose, height, ldl cholesterol, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood