rs1003393 chr19:13101400 C>T
- Sequence
ggggtcctacgttagagtaggagg[C/T]gccccccaggtgctaggcagcgca
- ASB in cell types
- HCT-116 (colon carcinoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.20 | -0.52 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.63 | -1.47 | 1.17 | 0.11 | Weak Discordant |
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Motif analysis
