rs10035226 chr5:40798349 G>A
- Sequence
cgggcgcagacgctccccctggcg[G/A]ggcgggcgggggctgccaggagaa
- ASB in cell types
- GM18505 (female B-cells Lymphoblastoid Cell Lines) HuCCT1 (intrahepatic cholangiocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.85 | -1.59 | 2.25 | -2.80 | Concordant | |||
| SMC1A_HUMAN | 2.85 | 0.21 | 1.00 | n/a | n/a |
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Motif analysis
