rs10046269 chr6:133569057 A>G
- Sequence
aatacctcagaaggacaccagagg[A/G]cgatgtattttaactgttcggatt
- ASB in cell types
- GM02630 (Fanconi anemi) GM19238 (female B-cells lymphoblastoid cell lines) GM02255 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.62 | 1.81 | 1.43 | 3.56 | Concordant | |||
| STAG1_HUMAN | 0.80 | 2.18 | 1.28 | n/a | n/a | |||
| SMC1A_HUMAN | 2.60 | -1.53 | 1.33 | n/a | n/a |
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Motif analysis
