rs10070102 chr5:31532771 C>A
- Sequence
accggacagtctggctgcagagcc[C/A]tgtgttcttaacctgcagttaact
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MNT_HUMAN MGAP_HUMAN EP400_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 0.85 | 1.94 | 1.50 | n/a | n/a | |||
| MGAP_HUMAN | -2.03 | 2.42 | 1.00 | n/a | n/a | |||
| EP400_HUMAN | -1.72 | 1.72 | 1.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.30 | 1.84 | 1.00 | n/a | n/a | |||
| MXI1_HUMAN | -2.15 | 2.42 | 1.00 | 4.16 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood