rs10103088 chr8:143055986 A>G

Sequence
tcctggtccttgttaacctgtcac[A/G]taaattctttttattggcacacct
ASB in cell types
HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) ZR-75-1 (invasive ductal carcinoma) CWR22 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN HXB13_HUMAN ZN189_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.10 0.18 3.7·10-291.00 1.75 n/a No Hit
ESR1_HUMAN 1.82 -0.11 3.4·10-251.00 1.95 n/a No Hit
HXB13_HUMAN 1.41 -2.57 4.1·10-31.00 2.33 n/a No Hit
ZN189_HUMAN 2.65 n/a 0.011.00 1.00 n/a n/a
ZBT17_HUMAN 2.75 n/a 0.021.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Heart_Atrial_Appendage,  Nerve_Tibial,  Thyroid,  Whole_Blood

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