rs10145379 chr14:37596608 T>G

Sequence
gattgggagatggtgcgtgtgttt[T/G]gagtgtgtgaccgtttgtatattt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF-7 C4-12 (invasive breast ductal carcinoma)
ASB for transcription factors
ESR1_HUMAN ZN687_HUMAN ZKSC1_HUMAN CLOCK_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.20 4.12 0.865.4·10-11 1.67 n/a No Hit
ZN687_HUMAN n/a 3.35 1.001.2·10-4 1.50 n/a n/a
ZKSC1_HUMAN -3.46 3.35 1.001.5·10-4 1.00 n/a No Hit
CLOCK_HUMAN -0.82 2.99 1.002.8·10-4 2.00 2.44 Concordant
ZFX_HUMAN -4.32 2.36 1.002.9·10-4 1.50 n/a No Hit
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Motif analysis

CLOCK_HUMAN Concordant
CLOCK_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Lung,  Pancreas,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Whole_Blood

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