rs10166844 chr2:54571135 T>C
- Sequence
tgcggtgaagagtggtgggggtgg[T/C]caggagagcagtggaagggaagtg
- ASB in cell types
- macrophages form periferal blood GM12878 (female B-cells lymphoblastoid cell line) TALL1 (T-Acute Lymphoblastic Leukemia)
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| macrophages form periferal blood | 1.60 | -0.98 | 2.00 | |||
| GM12878 (female B-cells lymphoblastoid cell line) | 0.81 | 0.54 | 1.15 | |||
| TALL1 (T-Acute Lymphoblastic Leukemia) | -1.48 | 2.50 | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood