rs10216972 chr8:22756289 C>T
- Sequence
gagggcgggcttgtgcgagaacct[C/T]tgcccctgggctcccaggatgtga
- ASB in cell types
- Peyer's patch neutrophils KATOIII (signet ring cell gastric adenocarcinoma)
- ASB for transcription factors
- HNF4A_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -4.57 | 2.74 | 1.50 | 2.34 | Concordant | |||
| CTCF_HUMAN | 0.51 | 0.82 | 1.37 | n/a | No Hit |
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Motif analysis
