rs10259316 chr7:17406082 G>T

Sequence
tctgtaaaatgctaggggcaaaac[G/T]gggttacaggaaggtgaagagtag
ASB in cell types
HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium)
ASB for transcription factors
RARA_HUMAN BCL6_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 2.41 n/a 3.5·10-51.00 1.50 n/a No Hit
BCL6_HUMAN 2.08 -3.81 0.011.00 1.50 n/a No Hit
GCR_HUMAN 1.05 0.54 0.030.95 1.38 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  homa-ir,  parkinsons disease,  rheumatoid arthritis,  suicide attempts in major depressive disorder,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Testis

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