rs10278152 chr7:48089060 T>A
- Sequence
cctcccgggaccttcgcgggaggg[T/A]ggagaggaggaaggcgggggaggc
- ASB in cell types
- A549 (lung carcinoma) SU-DHL-1 (Anaplastic large cell lymphoma) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CEBPB_HUMAN CEBPA_HUMAN STAT1_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | -0.97 | 2.30 | 1.38 | n/a | No Hit | |||
| CEBPA_HUMAN | -1.07 | 2.26 | 1.75 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.41 | 4.00 | n/a | No Hit | |||
| VEZF1_HUMAN | -3.59 | 1.32 | 2.00 | 2.96 | Concordant | |||
| IKZF2_HUMAN | 1.46 | -0.65 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood