rs10278588 chr7:73743151 C>A
- Sequence
atggtgacagcagcttgccagggg[C/A]ggtcatggggcaaattcctgctgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MDA-MB-134 (invasive lobular breast carcinoma) primary endometrium cancer liver
- ASB for transcription factors
- IKZF1_HUMAN BHE40_HUMAN RAD51_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 3.35 | -0.08 | 1.88 | n/a | No Hit | |||
| BHE40_HUMAN | 2.65 | n/a | 1.50 | n/a | No Hit | |||
| RAD51_HUMAN | 4.12 | 0.28 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.84 | -2.24 | 1.00 | n/a | n/a | |||
| MEF2B_HUMAN | 2.95 | -2.69 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, hdl cholesterol, ldl cholesterol, obesity with early age of onset (age >2), serum creatinine, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood