rs1028938 chr13:30371795 C>T
- Sequence
gtttcttgggccatgtgacataac[C/T]gccaggttatacttctgcaattac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02630 (Fanconi anemi) Jurkat (T-cells) germinal center CD77+ B cells
- ASB for transcription factors
- IKZF1_HUMAN EP300_HUMAN COE1_HUMAN INT13_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 0.99 | -0.23 | 1.40 | n/a | No Hit | |||
| EP300_HUMAN | 1.69 | -0.38 | 1.42 | n/a | n/a | |||
| COE1_HUMAN | 1.78 | -0.28 | 1.50 | n/a | No Hit | |||
| INT13_HUMAN | -0.54 | 1.31 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.04 | 0.09 | 1.09 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Thyroid