rs10403090 chr19:48321846 G>C
- Sequence
ggaaggaaggcggtgtcgaagccg[G/C]gagttgcgcggagaaggagcgctc
- ASB in cell types
- HEK293 (embryonic kidney) RCC4 (kidney cancer cell line) macrophages form periferal blood adult erythroblasts
- ASB for transcription factors
- RBBP5_HUMAN HIF1A_HUMAN CTCF_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | n/a | 3.42 | 2.00 | n/a | n/a | |||
| HIF1A_HUMAN | 2.07 | 0.18 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.84 | 0.55 | 1.15 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.19 | -0.60 | 2.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid