rs1041894 chr22:37283630 C>T
- Sequence
gaaccactgatccatttcaacagc[C/T]cccccagtggcagaagggagaaaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) bipolar neuron GM02630 (Fanconi anemi) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMCA5_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.31 | 3.16 | 2.31 | n/a | No Hit | |||
| STAG1_HUMAN | 0.42 | 3.07 | 3.83 | n/a | n/a | |||
| SMCA5_HUMAN | -3.95 | 3.63 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -2.75 | 2.65 | 1.00 | 0.99 | Weak Concordant | |||
| BRD4_HUMAN | -0.02 | 1.78 | 1.12 | n/a | n/a |
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Motif analysis
