rs10460586 chr2:85328154 G>A
- Sequence
ttcgcttactgtcgccgagtggga[G/A]gcgagcctcttcttcctggtttct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) CD14+ monocytes esophagus squamous epithelium
- ASB for transcription factors
- TYY1_HUMAN STAT1_HUMAN CLOCK_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.61 | -0.11 | 1.50 | n/a | No Hit | |||
| STAT1_HUMAN | 1.18 | -0.25 | 2.20 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.08 | -1.58 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.90 | 0.51 | 1.12 | 0.11 | Weak Discordant | |||
| JUN_HUMAN | 1.08 | 0.40 | 1.36 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood