rs10497357 chr2:170014085 T>C

Sequence
cagatggagctctgagctggaacg[T/C]tatcggtgttaaattgctttttct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NCOR1_HUMAN ZN395_HUMAN HTF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN 0.81 -0.42 5.3·10-41.00 1.00 n/a n/a
ZN395_HUMAN 1.98 -1.53 5.8·10-31.00 1.00 n/a n/a
HTF4_HUMAN 0.46 -0.05 0.031.00 1.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  serum creatinine,  severe diabetic retinopathy
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Testis,  Thyroid

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